基于网络药理学和分子对接探讨枸杞子治疗阿尔茨海默病的作用机制
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国家中医药管理局中医药传承与创新“百千万”人才工程:岐黄学者-国家中医药领军人才支持计划;深圳市医疗卫生“三名工程”资助项目(070020001)——陈可冀院士老年医学团队


Mechanism of Lycii Fructus in Treatment of Alzheimer's Disease Based on Network Pharmacology and Molecular Docking
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    摘要:

    目的:基于网络药理学方法及分子对接研究枸杞子治疗阿尔茨海默病(AD)的作用机制。方法:采用网络药理学方法,通过检索中药系统药理学数据库与分析平台(TCMSP),GeneCards、NCBI基因数据库及OMIM数据库,筛选枸杞子治疗AD的相关靶点,通过构建韦恩图,得到枸杞子-AD共同靶点,运用STRING数据库构建二者靶点蛋白质-蛋白质相互作用(PPI)网络图,并且运用Cytoscape 3.8.0软件进行可视化处理,筛选关键基因,同时对药物-疾病共有靶点进行基因本体(GO)富集分析和京都基因和基因组百科全书(KEGG),并使用AutodockTools1.5.6进行分子对接,验证靶点与小分子的结合度。结果:通过筛选,共得到121个枸杞子-AD共有靶点,41个关键靶点,包括JUN、AKT1、MAPK1、RELA、IL-6等,GO分析发现,生物学过程主要与氧化应激、衰老等相关,KEGG通路分析富集在AGE-RAGE、HIF-1等信号通路。将靶点MAPK1与β-谷甾醇进行分子对接发现,结合活性较好。结论:本研究初步探讨了枸杞子治疗阿尔茨海默病的主要活性成分、相关靶点及其相关通路,发现其多成分、多靶点、多通路的特点,为后续实验验证提供了一定的参考和物质基础。

    Abstract:

    To explore the mechanism of Lycii Fructus in the treatment of Alzheimer's disease (AD) based on network pharmacology and molecular docking.Methods:The targets of Lycii Fructus against AD were screened out from TCMSP,GeneCards,NCBI,and OMIM by network pharmacology.The Venn diagram was plotted to obtain the common targets of Lycii Fructus and AD.The protein-protein interaction (PPI) network was delineated by STRING.Cytoscape 3.8.0 was used for visualization processing,and key genes were screened out.The common targets of Lycii Fructus and AD underwent GO and KEGG pathway enrichment analyses.AutoDock Tools 1.5.6 was used for molecular docking to verify the binding degree between the targets and small molecules.Results:A total of 121 common targets and 41 key targets of Lycii Fructus and AD were obtained,including JUN,AKT1,MAPK1,RELA,and IL-6.As revealed by GO analysis,oxidative stress,aging,and other biological processes were mainly involved.KEGG pathway analysis showed that the pathways were mainly enriched in AGE-RAGE,HIF-1,and other signaling pathways.MAPK1 had good binding activity with β-sitosterol as indicated by molecular docking.Conclusion:The present study investigated the main active components,related targets,and related pathways of Lycii Fructus in the treatment of AD,and unraveled the characteristics of multi-component,multi-target,and multi-pathway,which provided references and material basis for the follow-up experimental verification.

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吉洁,梅俊,信琪琪,丛伟红,张颖,徐凤芹.基于网络药理学和分子对接探讨枸杞子治疗阿尔茨海默病的作用机制[J].世界中医药,2022,(03).

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  • 收稿日期:2021-01-30
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  • 在线发布日期: 2022-03-18
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